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Contents:

  • Python based lipid BILayer molecular simulation analysis Toolkit
  • Install
  • Documentation and Usage
  • Contact
  • Contributing
  • License
  • Acknowledgments
  • Citing
  • Analyses available to the BilayerAnalyzer
    • ac - Isothermal area compressibility.
    • acm - Area compressibility modulus.
    • ald - Average lateral displacement.
    • apl_box - Area per lipid using box dimensions.
    • apl_grid - Area per lipid using 2D lipid grids.
    • area_fluctuation - Bilayer lateral box area fluctuation.
    • com_lateral_rdf - Lipid-lipid RDF in the bilayer lateral plane.
    • dc_cluster - Hiearchical clustering of lipids based on distance.
    • disp_vec_corr_avg - Weighted average of displacement vector correlations.
    • disp_vec_corr - Displacement vector correlation matrix.
    • disp_vec_nncorr - Displacement vector nearest neigbor correlations.
    • disp_vec - Displacement vectors.
    • flip_flop - Count lipid flip flops.
    • halperin_nelson - Halperin and Nelson’s rotational invariant.
    • lipid_collinearity - Lipid-lipid collinearity.
    • lipid_length - Lipid length using the lipid vectors.
    • lipid_tilt - Lipid tilt using the lipid vectors.
    • loa - Lateral lipid orientation angle.
    • lop - Lateral lipid orientation parameter.
    • mass_dens - Mass density profile.
    • msd_dist - Mean squared displacement as a function of distance.
    • msd_multi - Multiple time origin mean squared displacement.
    • msd - Single time origin mean squared displacement.
    • ndcorr - Correlation between bilayer surface curvature and lipid clustering.
    • nnf - Lateral order nearest neighbor fraction.
    • spatial_velocity_corr - Weighted average of displacement vector correlations.
    • thickness_grid - Bilayer thickness using lipid_grid.
    • thickness_leaflet_distance - Distance between the leaflets’ centers of mass along the normal.
    • thickness_mass_weighted_std - Estimates the thickness using two times the mass-weighted standard deviation of coordinates along the normal.
    • thickness_peak_distance - Estimate the bilayer thickness using distance between corresponding peaks in a mass density profile.
    • vcm - Volume compressibility modulus.
      • BilayerAnalyzer analysis: vcm - Volume compressibility modulus.
      • Description
      • Syntax
      • Related analyses
      • References
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  • Analyses available to the BilayerAnalyzer »
  • vcm - Volume compressibility modulus.
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vcm - Volume compressibility modulus.¶

  • BilayerAnalyzer analysis: vcm - Volume compressibility modulus.
  • Description
    • Initiated by instance of:
  • Syntax
    • Examples
    • Output Info:
  • Related analyses
  • References
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